Gene: CDH2 ENSG00000170558

Description

cadherin 2, type 1, N-cadherin (neuronal) [Source:HGNC Symbol;Acc:1759]

Gene Synonyms

CD325, CDHN, CDw325, NCAD

Location

Chromosome 18: 25,530,930-25,757,410 reverse strand.

GRCh37:CM000680.1

About this gene

This gene has 5 transcripts (splice variants), 13 paralogues and is associated with 3 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000269141.3	CDH2-001	4332	906aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11891	C9J126 C9JMH2 P19022	NM_001792.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000399380.3	CDH2-003	3737	875aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MWK3 C9J126 C9JMH2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000418492.1	CDH2-002	740	191aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J126 C9J8J8 C9JMH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000430882.1	CDH2-005	610	120aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J126 C9JMH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413878.1	CDH2-004	563	73aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JMH2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Name

CDH2 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: P19022

CCDS

This gene is a member of the Human CCDS set: CCDS11891.1

Ensembl version

ENSG00000170558.4

Other assemblies

This gene maps to 27,950,966-28,177,446 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000059940 (version 10)

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Gene: CDH2 ENSG00000170558

Summary