Description
nuclear receptor corepressor 1 [Source:HGNC Symbol;Acc:7672]
Gene Synonyms
KIAA1047, MGC104216, N-CoR, N-CoR1, TRAC1, hCIT529I10, hN-CoR
Location
Chromosome 17: 15,932,471-16,121,499 reverse strand.
GRCh37:CM000679.1
About this gene
This gene has 27 transcripts (splice variants), 1 paralogue and is associated with 91 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000268712.3 | NCOR1-001 | 10720 | 2440aa | ENSP00000268712.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11175 | B4DJ25 C9JAP0 O75376 Q9NSZ0 | NM_006311.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000395851.1 | NCOR1-003 | 7950 | 2337aa | ENSP00000379192.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54095 | C9JAP0 O75376 | NM_001190440.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000395849.2 | NCOR1-018 | 3419 | 1071aa | ENSP00000379190.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DJ25 Q9NSZ0 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000395857.3 | NCOR1-201 | 3419 | 1024aa | ENSP00000379198.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DJ25 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000395848.1 | NCOR1-007 | 3106 | 914aa | ENSP00000379189.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54094 | O75376 | NM_001190438.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000436828.1 | NCOR1-002 | 1969 | 537aa | ENSP00000387727.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JAP0 E7EVU5 Q05CG3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000411510.1 | NCOR1-009 | 1883 | 545aa | ENSP00000407998.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JAP0 E7EW50 Q86W52 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000582357.1 | NCOR1-017 | 1877 | 546aa | ENSP00000462308.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JAP0 J3KS51 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000430577.2 | NCOR1-012 | 1204 | 125aa | ENSP00000410784.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JAP0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000580554.1 | NCOR1-015 | 650 | 217aa | ENSP00000463169.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000579606.1 | NCOR1-025 | 551 | 184aa | ENSP00000462281.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000579573.2 | NCOR1-026 | 549 | 183aa | ENSP00000461959.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRE4 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000436068.1 | NCOR1-006 | 274 | 92aa | ENSP00000389839.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000603989.1 | NCOR1-029 | 247 | 57aa | ENSP00000474008.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | S4R380 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000460276.1 | NCOR1-008 | 1848 | 88aa | ENSP00000462794.1 | Nonsense mediated decay | J3KT44 | - | - | |
| ENST00000583226.1 | NCOR1-028 | 614 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000466825.1 | NCOR1-011 | 589 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000470782.1 | NCOR1-005 | 3987 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000458113.2 | NCOR1-022 | 3490 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000464381.1 | NCOR1-010 | 2474 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000580617.1 | NCOR1-024 | 1352 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000585296.1 | NCOR1-020 | 983 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000584872.1 | NCOR1-027 | 865 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000472189.1 | NCOR1-013 | 793 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000583234.1 | NCOR1-014 | 755 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000582565.1 | NCOR1-023 | 672 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000579974.1 | NCOR1-021 | 406 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
