Gene: TPM1 ENSG00000140416

Description

tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:12010]

Gene Synonyms

C15orf13, CMD1Y, CMH3, HTM-alpha, LVNC9, TMSA

Location

Chromosome 15: 63,334,831-63,364,114 forward strand.

GRCh37:CM000677.1

About this gene

This gene has 32 transcripts (splice variants), 3 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358278.3	TPM1-018	1717	284aa	ENSP00000351022.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32263	D9YZV5 H0YL42 P09493	NM_001018006.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000357980.4	TPM1-008	1800	326aa	ENSP00000350667.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6ZN40	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000267996.7	TPM1-005	1670	284aa	ENSP00000267996.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32262	P09493	NM_001018007.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000559397.1	TPM1-010	1655	284aa	ENSP00000452879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58368	H0YL42 P09493	NM_001018020.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000334895.5	TPM1-011	1637	245aa	ENSP00000334624.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32264	D9YZV7 P09493 Q07413	NM_001018008.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000404484.4	TPM1-012	1568	248aa	ENSP00000384315.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL42 H7BYY1 Q07413	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000288398.6	TPM1-001	1295	284aa	ENSP00000288398.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10181	H0YL42 P09493	NM_000366.5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000403994.3	TPM1-002	1049	284aa	ENSP00000385107.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45273	D9YZV4 P09493	NM_001018005.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000560970.1	TPM1-003	1039	265aa	ENSP00000453062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559556.1	TPM1-028	977	284aa	ENSP00000453941.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58369	P09493	NM_001018004.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000560959.1	TPM1-014	925	275aa	ENSP00000453724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z596 H0YL42 Q07413	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000559281.1	TPM1-015	851	248aa	ENSP00000452658.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YK48 Q07413	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000558910.1	TPM1-023	782	33aa	ENSP00000452830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000317516.7	TPM1-016	738	245aa	ENSP00000322577.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7S3 H0YL42 Q07413	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000561266.1	TPM1-027	671	223aa	ENSP00000453955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560615.1	TPM1-022	570	108aa	ENSP00000453050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL42	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560445.1	TPM1-019	485	70aa	ENSP00000452999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKZ6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000560679.1	TPM1-024	292	8aa	ENSP00000453136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000558264.1	TPM1-017	2687	92aa	ENSP00000452624.1	Nonsense mediated decay		H0YK20	-	-
ENST00000558347.1	TPM1-009	1525	157aa	ENSP00000452887.1	Nonsense mediated decay		H0YKP3	-	-
ENST00000558544.1	TPM1-013	1399	49aa	ENSP00000453817.1	Nonsense mediated decay		H0YN06 Q07413	-	-
ENST00000561395.1	TPM1-033	673	68aa	ENSP00000453092.1	Nonsense mediated decay		H0YL80	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561425.1	TPM1-020	582	40aa	ENSP00000453324.1	Nonsense mediated decay		H0YLS7	-	-
ENST00000559831.1	TPM1-029	573	142aa	ENSP00000452977.1	Nonsense mediated decay		H0YK20 H0YKX5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000560975.1	TPM1-007	2855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558314.1	TPM1-006	1031	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561242.1	TPM1-032	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558400.1	TPM1-030	658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558868.1	TPM1-021	653	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560131.1	TPM1-026	537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000558072.1	TPM1-025	525	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559108.1	TPM1-031	437	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: TPM1 ENSG00000140416

Summary