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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS33A ENSG00000139719

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Description

vacuolar protein sorting 33 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:18179]

Location

Chromosome 12: 122,714,111-122,751,068 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 9 transcripts (splice variants), 2 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000267199.4	VPS33A-001	4586	596aa	ENSP00000267199.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9231	Q96AX1 Q9H6C4	NM_022916.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000451053.2	VPS33A-002	1154	186aa	ENSP00000442951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6Y0	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000536212.1	VPS33A-008	567	154aa	ENSP00000439255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2X5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543633.1	VPS33A-003	2019	42aa	ENSP00000442392.1	Nonsense mediated decay		F5H7N5	-	-
ENST00000542310.1	VPS33A-004	756	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000541169.1	VPS33A-009	594	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000540669.1	VPS33A-007	455	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000544349.1	VPS33A-005	2114	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000542790.1	VPS33A-006	1133	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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