Description
TAR (HIV-1) RNA binding protein 2 [Source:HGNC Symbol;Acc:11569]
Gene Synonyms
LOQS, TRBP, TRBP1, TRBP2
Location
Chromosome 12: 53,894,705-53,900,215 forward strand.
GRCh37:CM000674.1
About this gene
This gene has 20 transcripts (splice variants) and 1 paralogue.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000266987.2 | TARBP2-001 | 1867 | 366aa | ENSP00000266987.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS8861 | H3BV98 Q15633 | NM_134323.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000394357.2 | TARBP2-009 | 1402 | 345aa | ENSP00000377885.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS41791 | H3BV98 Q15633 | NM_134324.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000456234.2 | TARBP2-006 | 1368 | 345aa | ENSP00000416077.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS41791 | H3BV98 Q15633 | NM_004178.4 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000550407.1 | TARBP2-016 | 1132 | 227aa | ENSP00000447767.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000552857.1 | TARBP2-021 | 916 | 165aa | ENSP00000449537.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VW32 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000552817.1 | TARBP2-011 | 668 | 160aa | ENSP00000458011.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BV98 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000550147.1 | TARBP2-004 | 1855 | 113aa | ENSP00000450320.1 | Nonsense mediated decay | F8VP94 F8VYK6 F8VZZ7 | - | - | |
| ENST00000549572.1 | TARBP2-007 | 1514 | 187aa | ENSP00000448948.1 | Nonsense mediated decay | F8VYK3 | - | - | |
| ENST00000548971.1 | TARBP2-005 | 1493 | 94aa | ENSP00000447993.1 | Nonsense mediated decay | F8VTT7 | - | - | |
| ENST00000549679.1 | TARBP2-008 | 1466 | 88aa | ENSP00000448943.1 | Nonsense mediated decay | F8VYK6 | - | - | |
| ENST00000551741.1 | TARBP2-022 | 992 | 92aa | ENSP00000447262.1 | Nonsense mediated decay | F8VYK6 F8VZZ7 | - | - | |
| ENST00000547064.1 | TARBP2-015 | 759 | 31aa | ENSP00000448199.1 | Nonsense mediated decay | F8VSA1 | - | - | |
| ENST00000549028.1 | TARBP2-020 | 557 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000549610.1 | TARBP2-002 | 1116 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000546889.1 | TARBP2-003 | 1063 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000551157.2 | TARBP2-017 | 1008 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000552650.1 | TARBP2-012 | 954 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000546763.1 | TARBP2-018 | 846 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000547388.1 | TARBP2-010 | 576 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000547541.1 | TARBP2-013 | 430 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
