Gene: SEMA3A ENSG00000075213

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A [Source:HGNC Symbol;Acc:10723]

Gene Synonyms

COLL1, HH16, Hsema-I, Hsema-III, SEMA1, SEMAD, SEMAIII, SEMAL, SemD, coll-1

Location

Chromosome 7: 83,585,093-84,122,040 reverse strand.

GRCh37:CM000669.1

About this gene

This gene has 7 transcripts (splice variants), 11 paralogues and is associated with 4 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265362.4	SEMA3A-001	8225	771aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5599	C9J9C4 C9JD25 Q14563 Q75MQ2 Q86UJ2	NM_006080.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000436949.1	SEMA3A-008	2550	771aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5599	C9J9C4 C9JD25 Q14563 Q75MQ2 Q86UJ2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000424555.1	SEMA3A-003	568	19aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD25	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420047.1	SEMA3A-002	553	149aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9C4 C9JD25	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000448879.1	SEMA3A-005	534	37aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JD25 Q14563	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000471474.1	SEMA3A-006	688	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490883.1	SEMA3A-007	237	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Name

SEMA3A (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q14563

CCDS

This gene is a member of the Human CCDS set: CCDS5599.1

Ensembl version

ENSG00000075213.6

Other assemblies

This gene maps to 83,955,777-84,492,724 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000023443 (version 14)

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Gene: SEMA3A ENSG00000075213

Summary