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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: AFF4 ENSG00000072364

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Description

AF4/FMR2 family, member 4 [Source:HGNC Symbol;Acc:17869]

Gene Synonyms

AF5Q31, MCEF

Location

Chromosome 5: 132,211,071-132,299,326 reverse strand.

GRCh37:CM000667.1

About this gene

This gene has 9 transcripts (splice variants), 3 paralogues and is associated with 59 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265343.5	AFF4-001	9552	1163aa	ENSP00000265343.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4164	C9JCE0 Q9UHB7	NM_014423.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000378595.3	AFF4-004	3348	900aa	ENSP00000367858.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCE0 Q9UHB7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000421773.1	AFF4-009	541	148aa	ENSP00000395268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCE0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425658.1	AFF4-005	513	171aa	ENSP00000409069.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000491831.1	AFF4-002	1667	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478588.1	AFF4-008	897	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000378593.2	AFF4-006	430	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465484.1	AFF4-003	1729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477369.1	AFF4-007	728	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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