Description
SMG6 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:17809]
Gene Synonyms
C17orf31, EST1A, KIAA0732, SMG-6, hSMG5/7a
Location
Chromosome 17: 1,963,133-2,207,065 reverse strand.
GRCh37:CM000679.1
About this gene
This gene has 21 transcripts (splice variants) and 2 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000263073.6 | SMG6-001 | 5960 | 1419aa | ENSP00000263073.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11016 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_017575.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000544865.1 | SMG6-201 | 6331 | 1388aa | ENSP00000443920.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000354901.4 | SMG6-002 | 3473 | 511aa | ENSP00000346977.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58498 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_001256827.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000536871.2 | SMG6-005 | 1865 | 511aa | ENSP00000440283.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58498 | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 K7EKV2 K7ELM2 K7ENH7 Q86US8 | NM_001256828.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000572369.1 | SMG6-008 | 689 | 138aa | ENSP00000465793.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7EKV2 K7ELM2 K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000575454.1 | SMG6-010 | 652 | 208aa | ENSP00000460273.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L390 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000570659.1 | SMG6-019 | 592 | 163aa | ENSP00000460898.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L355 I3L3A9 I3L421 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000571442.1 | SMG6-015 | 588 | 164aa | ENSP00000459164.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L1W8 I3L355 I3L3A9 I3L421 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000575663.1 | SMG6-014 | 574 | 162aa | ENSP00000458635.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L176 I3L355 I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000570606.1 | SMG6-021 | 572 | 123aa | ENSP00000460191.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L355 I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000575176.1 | SMG6-009 | 557 | 124aa | ENSP00000466139.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ELM2 K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000572205.1 | SMG6-018 | 551 | 115aa | ENSP00000466951.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7ENH7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000570668.1 | SMG6-013 | 547 | 119aa | ENSP00000460301.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L3A9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000573166.1 | SMG6-003 | 4236 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000570756.1 | SMG6-004 | 2426 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000576218.1 | SMG6-020 | 902 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000573827.1 | SMG6-023 | 601 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000573153.1 | SMG6-012 | 552 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000575338.1 | SMG6-007 | 546 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000574501.1 | SMG6-022 | 2419 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000570874.1 | SMG6-011 | 533 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
