Gene: LGALS3BP ENSG00000108679

Description

lectin, galactoside-binding, soluble, 3 binding protein [Source:HGNC Symbol;Acc:6564]

Gene Synonyms

90K, BTBD17B, M2BP, MAC-2-BP, TANGO10B

Location

Chromosome 17: 76,967,320-76,976,191 reverse strand.

GRCh37:CM000679.1

About this gene

This gene has 19 transcripts (splice variants) and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262776.3	LGALS3BP-001	2405	585aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11759	B4DVE1 K7EKQ5 K7EP36 K7ES75 K7ESM3 Q08380	NM_005567.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000591778.1	LGALS3BP-007	1961	205aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJD3 K7ES75	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000585407.1	LGALS3BP-021	936	210aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKQ5 K7ES75 K7ESM3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000589775.2	LGALS3BP-018	893	209aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES75 K7ESM3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589527.1	LGALS3BP-020	818	259aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKQ5 K7EP36 K7ES75 K7ESM3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589906.1	LGALS3BP-010	540	144aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591274.1	LGALS3BP-017	379	88aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES75	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587251.1	LGALS3BP-002	2091	113aa	Nonsense mediated decay		K7EN99	-	-
ENST00000587311.1	LGALS3BP-003	1905	48aa	Nonsense mediated decay		K7EQT9	-	-
ENST00000586720.1	LGALS3BP-004	1736	18aa	Nonsense mediated decay		K7ELA1	-	-
ENST00000588198.1	LGALS3BP-005	1132	131aa	Nonsense mediated decay		K7ERZ6 K7ES75	-	-
ENST00000587310.1	LGALS3BP-009	768	41aa	Nonsense mediated decay		K7ELA1 K7ER67	-	-
ENST00000588899.1	LGALS3BP-011	668	62aa	Nonsense mediated decay		K7EM15	-	-
ENST00000588990.1	LGALS3BP-006	618	41aa	Nonsense mediated decay		K7ELA1 K7ER67	-	-
ENST00000588205.1	LGALS3BP-019	581	62aa	Nonsense mediated decay		K7EM15	-	-
ENST00000588587.1	LGALS3BP-013	1020	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588508.1	LGALS3BP-014	882	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592255.1	LGALS3BP-016	556	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586300.1	LGALS3BP-012	442	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Name

LGALS3BP (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q08380

CCDS

This gene is a member of the Human CCDS set: CCDS11759.1

Ensembl version

ENSG00000108679.8

Other assemblies

This gene maps to 78,971,238-78,980,109 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000177572 (version 6)

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Gene: LGALS3BP ENSG00000108679

Summary