Gene: SMARCD3 ENSG00000082014

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 [Source:HGNC Symbol;Acc:11108]

Gene Synonyms

BAF60C, CRACD3, Rsc6p

Location

Chromosome 7: 150,935,850-150,974,982 reverse strand.

GRCh37:CM000669.1

About this gene

This gene has 15 transcripts (splice variants) and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262188.8	SMARCD3-002	1993	483aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34780	Q6STE5	NM_001003801.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000392811.2	SMARCD3-001	2018	470aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5924	C9JYI7 Q6STE5	NM_003078.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000356800.2	SMARCD3-201	1669	470aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5924	C9JYI7 Q6STE5	NM_001003802.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000491651.1	SMARCD3-008	613	139aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYI7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000469154.1	SMARCD3-004	2415	73aa	Nonsense mediated decay		F8WBJ3	-	-
ENST00000485592.1	SMARCD3-011	820	68aa	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477169.1	SMARCD3-009	802	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460431.1	SMARCD3-010	673	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496530.1	SMARCD3-015	468	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489503.1	SMARCD3-013	378	No protein	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470588.1	SMARCD3-007	1755	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472988.1	SMARCD3-005	1654	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485610.1	SMARCD3-006	1480	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472789.1	SMARCD3-014	863	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472103.1	SMARCD3-012	798	No protein	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Name

SMARCD3 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: Q6STE5

CCDS

This gene is a member of the Human CCDS set: CCDS34780.1, CCDS5924.1

Ensembl version

ENSG00000082014.12

Other assemblies

This gene maps to 151,238,764-151,277,896 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000157431 (version 7)

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Gene: SMARCD3 ENSG00000082014

Summary