Description
macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:7376]
Gene Synonyms
CD204, SCARA1, SR-A, SRA, phSR1, phSR2
Location
Chromosome 8: 15,965,387-16,424,999 reverse strand.
GRCh37:CM000670.1
About this gene
This gene has 15 transcripts (splice variants), 2 paralogues and is associated with 3 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000262101.5 | MSR1-001 | 2132 | 451aa | ENSP00000262101.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5995 | E5RFW8 P21757 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000350896.3 | MSR1-201 | 3572 | 388aa | ENSP00000262100.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5996 | E5RFW8 P21757 | NM_138716.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000381998.4 | MSR1-003 | 2826 | 358aa | ENSP00000371428.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5997 | E5RFW8 F5GZJ2 P21757 | NM_002445.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000445506.2 | MSR1-004 | 1513 | 469aa | ENSP00000405453.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DDJ5 E5RFW8 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000355282.2 | MSR1-002 | 1167 | 388aa | ENSP00000347430.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5996 | E5RFW8 P21757 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000536385.1 | MSR1-202 | 955 | 132aa | ENSP00000444414.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GZJ2 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000522672.1 | MSR1-006 | 695 | 149aa | ENSP00000430536.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YBY2 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000518026.1 | MSR1-007 | 530 | 58aa | ENSP00000429498.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RI91 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000518960.1 | MSR1-008 | 353 | 64aa | ENSP00000427905.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E5RFW8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000519060.2 | MSR1-005 | 1009 | 37aa | ENSP00000428865.1 | Nonsense mediated decay | E5RFI4 | - | - | |
| ENST00000518343.1 | MSR1-010 | 597 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000521876.1 | MSR1-011 | 540 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000522130.1 | MSR1-009 | 489 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000517522.1 | MSR1-013 | 403 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000520846.1 | MSR1-012 | 373 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - |
