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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RARA ENSG00000131759

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Description

retinoic acid receptor, alpha [Source:HGNC Symbol;Acc:9864]

Gene Synonyms

NR1B1, RAR

Location

Chromosome 17: 38,465,444-38,513,094 forward strand.

GRCh37:CM000679.1

About this gene

This gene has 10 transcripts (splice variants), 18 paralogues and is associated with 62 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254066.5	RARA-001	2414	462aa	ENSP00000254066.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11366	J3KSJ4 J3QRM2 P10276 Q6I9R7	NM_000964.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000394081.3	RARA-004	2285	457aa	ENSP00000377643.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42317	F1D8N9 J3KSJ4 P10276	NM_001024809.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000425707.3	RARA-007	2240	365aa	ENSP00000389993.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45671	P10276	NM_001145302.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000394089.2	RARA-002	2024	462aa	ENSP00000377649.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11366	J3KSJ4 J3QRM2 P10276 Q6I9R7	NM_001145301.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000394086.3	RARA-003	2008	478aa	ENSP00000377648.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MUP8 J3KSJ4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000475125.1	RARA-005	813	186aa	ENSP00000462514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSJ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577646.1	RARA-008	733	66aa	ENSP00000464287.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420042.1	RARA-006	1052	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582914.1	RARA-009	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579727.1	RARA-010	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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