Description
RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923]
Gene Synonyms
CAPER, CAPERalpha, CC1.3, FSAP59, HCC1, RNPC2, fSAP59
Location
Chromosome 20: 34,291,531-34,330,234 reverse strand.
GRCh37:CM000682.1
About this gene
This gene has 44 transcripts (splice variants) and 1 paralogue.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000253363.6 | RBM39-002 | 2488 | 530aa | ENSP00000253363.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13266 | B4E1M7 B7Z4L7 E1P5S2 Q14498 Q5QP22 Q68DD9 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000361162.6 | RBM39-001 | 2831 | 524aa | ENSP00000354437.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13265 | Q14498 Q5QP22 Q6N037 | NM_184234.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000528062.3 | RBM39-015 | 2421 | 508aa | ENSP00000436747.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56186 | B7Z4L7 E1P5S2 Q14498 Q5QP21 | NM_001242600.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000407261.4 | RBM39-201 | 2147 | 373aa | ENSP00000384541.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z4L7 E1P5S2 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000374038.3 | RBM39-020 | 1026 | 231aa | ENSP00000363150.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5QP23 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000448303.1 | RBM39-035 | 1008 | 336aa | ENSP00000394824.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000426951.1 | RBM39-039 | 840 | 86aa | ENSP00000405916.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000434927.1 | RBM39-018 | 716 | 193aa | ENSP00000393493.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q5QP22 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000397370.3 | RBM39-013 | 612 | 95aa | ENSP00000380527.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8MYG5 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000403542.2 | RBM39-006 | 2883 | 40aa | ENSP00000385977.2 | Nonsense mediated decay | F2Z3E6 H7BZG3 | - | - | |
| ENST00000338163.6 | RBM39-008 | 2792 | 423aa | ENSP00000344581.6 | Nonsense mediated decay | G3XAC6 Q5QP22 | - | - | |
| ENST00000429968.1 | RBM39-005 | 2149 | 47aa | ENSP00000395124.1 | Nonsense mediated decay | F2Z2Z5 | - | - | |
| ENST00000444878.1 | RBM39-007 | 2124 | 40aa | ENSP00000394602.1 | Nonsense mediated decay | F2Z3E6 H7BZG3 | - | - | |
| ENST00000453310.1 | RBM39-012 | 1068 | 40aa | ENSP00000397443.1 | Nonsense mediated decay | F2Z3E6 H7BZG3 | - | - | |
| ENST00000412738.1 | RBM39-017 | 1018 | 40aa | ENSP00000397917.1 | Nonsense mediated decay | F2Z3E6 H7BZG3 | - | - | |
| ENST00000433027.1 | RBM39-045 | 611 | 39aa | ENSP00000407466.1 | Nonsense mediated decay | F8WF24 | - | - | |
| ENST00000416529.1 | RBM39-024 | 594 | 62aa | ENSP00000407150.1 | Nonsense mediated decay | F8WF73 | - | - | |
| ENST00000416108.1 | RBM39-043 | 577 | 40aa | ENSP00000406900.1 | Nonsense mediated decay | F2Z3E6 H7BZG3 | - | - | |
| ENST00000425184.1 | RBM39-021 | 526 | 23aa | ENSP00000389459.1 | Nonsense mediated decay | H7BZG3 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000455343.1 | RBM39-019 | 441 | 40aa | ENSP00000395563.1 | Nonsense mediated decay | F2Z3E6 H7BZG3 | - | - | |
| ENST00000449489.1 | RBM39-044 | 432 | 40aa | ENSP00000390303.1 | Nonsense mediated decay | F2Z3E6 H7BZG3 | - | - | |
| ENST00000463098.1 | RBM39-003 | 869 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000495293.1 | RBM39-032 | 759 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000476806.1 | RBM39-029 | 754 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000494274.1 | RBM39-040 | 704 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000442447.1 | RBM39-016 | 644 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000496183.1 | RBM39-033 | 632 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000475651.1 | RBM39-028 | 555 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000498280.1 | RBM39-037 | 444 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000490354.1 | RBM39-034 | 436 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000470563.1 | RBM39-027 | 384 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000487604.1 | RBM39-025 | 370 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000463004.1 | RBM39-004 | 4580 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461283.1 | RBM39-009 | 2415 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000492779.1 | RBM39-010 | 2316 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000482563.1 | RBM39-011 | 1737 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000477334.1 | RBM39-026 | 949 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461849.1 | RBM39-014 | 861 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000465158.1 | RBM39-031 | 825 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000490484.2 | RBM39-036 | 687 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000481037.1 | RBM39-022 | 687 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000493853.1 | RBM39-042 | 567 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000471635.1 | RBM39-030 | 549 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000468086.1 | RBM39-041 | 549 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
