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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COLGALT1 ENSG00000130309

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Description

collagen beta(1-O)galactosyltransferase 1 [Source:HGNC Symbol;Acc:26182]

Gene Synonyms

FLJ22329, GLT25D1

Location

Chromosome 19: 17,666,403-17,693,971 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 6 transcripts (splice variants) and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252599.4	COLGALT1-001	3704	622aa	ENSP00000252599.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12363	B3KQ10 M0QYH0 Q8NBJ5 Q8WUI9	NM_024656.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000597147.1	COLGALT1-007	654	218aa	ENSP00000468947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000600474.1	COLGALT1-005	552	138aa	ENSP00000469817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYH0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000601354.1	COLGALT1-006	546	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593832.1	COLGALT1-004	2941	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000597075.1	COLGALT1-008	737	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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