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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX17 ENSG00000115234

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Description

sorting nexin 17 [Source:HGNC Symbol;Acc:14979]

Gene Synonyms

KIAA0064

Location

Chromosome 2: 27,593,389-27,599,995 forward strand.

GRCh37:CM000664.1

About this gene

This gene has 12 transcripts (splice variants) and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000233575.2	SNX17-001	2044	470aa	ENSP00000233575.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1750	B4DDM3 B4DLL7 B4DTB8 Q15036	NM_014748.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542478.1	SNX17-202	1844	256aa	ENSP00000442567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDM3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543024.1	SNX17-203	1567	256aa	ENSP00000441779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DDM3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537606.1	SNX17-201	1451	445aa	ENSP00000439208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58704	B4DDM3 B4DLL7 Q15036	NM_001267060.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000427123.1	SNX17-003	2007	87aa	ENSP00000405399.1	Nonsense mediated decay		F8WAZ0	-	-
ENST00000440760.1	SNX17-002	1955	53aa	ENSP00000399727.1	Nonsense mediated decay		F8WFA0	-	-
ENST00000453453.1	SNX17-005	1638	69aa	ENSP00000401922.1	Nonsense mediated decay		F8WEG6	-	-
ENST00000494893.1	SNX17-004	966	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489402.1	SNX17-007	743	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493711.1	SNX17-009	583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484886.1	SNX17-006	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464279.1	SNX17-008	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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