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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NOD1 ENSG00000106100

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Description

nucleotide-binding oligomerization domain containing 1 [Source:HGNC Symbol;Acc:16390]

Gene Synonyms

CARD4, CLR7.1, NLRC1

Location

Chromosome 7: 30,464,143-30,518,400 reverse strand.

GRCh37:CM000669.1

About this gene

This gene has 9 transcripts (splice variants) and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222823.4	NOD1-001	4499	953aa	ENSP00000222823.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5427	C9J8X8 Q7Z2K1 Q9Y239	NM_006092.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000423334.2	NOD1-201	1587	249aa	ENSP00000409416.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTU3 C9J8X8 Q7Z2K1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000411552.1	NOD1-004	794	59aa	ENSP00000396046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8X8 Q7Z2K1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419799.1	NOD1-005	757	59aa	ENSP00000395551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8X8 Q7Z2K1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000413433.1	NOD1-006	637	59aa	ENSP00000399505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8X8 Q7Z2K1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419601.1	NOD1-007	578	45aa	ENSP00000410917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8X8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434755.1	NOD1-002	4610	779aa	ENSP00000416946.1	Nonsense mediated decay		C9J8X8 G3XAL1 Q7Z2K1	-	-
ENST00000489614.1	NOD1-003	3098	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467706.1	NOD1-008	905	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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