Description
cut-like homeobox 1 [Source:HGNC Symbol;Acc:2557]
Gene Synonyms
CASP, CDP, CDP/Cut, CDP/Cux, CDP1, COY1, CUT, CUTL1, CUX, Clox, Cux/CDP, GOLIM6, Nbla10317, RETfusion, p100, p110, p200, p75
Location
Chromosome 7: 101,458,959-101,927,249 forward strand.
GRCh37:CM000669.1
View alleles of this gene on alternative sequences
About this gene
This gene has 20 transcripts (splice variants), 1 gene allele, 221 orthologues, 1 paralogue and is associated with 82 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000360264.3 | CUX1-005 | 13762 | 1516aa | ENSP00000353401.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56498 | P39880 | NM_001202543.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000292535.7 | CUX1-004 | 13747 | 1505aa | ENSP00000292535.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5721 | P39880 | NM_181552.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000549414.2 | CUX1-006 | 4452 | 1483aa | ENSP00000446630.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P39880 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000550008.2 | CUX1-007 | 4350 | 1449aa | ENSP00000447373.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P39880 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000546411.2 | CUX1-008 | 4212 | 1403aa | ENSP00000450125.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P39880 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000556210.1 | CUX1-009 | 4044 | 1347aa | ENSP00000451558.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P39880 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000437600.4 | CUX1-003 | 3250 | 676aa | ENSP00000414091.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS47672 | Q13948 Q75MT4 | NM_181500.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000292538.4 | CUX1-001 | 2930 | 678aa | ENSP00000292538.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS5720 | Q13948 Q75MT4 | NM_001913.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000547394.2 | CUX1-002 | 2878 | 662aa | ENSP00000449371.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56500 | Q13948 Q75MT4 | NM_001202544.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000425244.2 | CUX1-018 | 2776 | 632aa | ENSP00000409745.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56499 | P39880 Q75MT4 | NM_001202545.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000393824.3 | CUX1-016 | 2331 | 639aa | ENSP00000377410.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS59071 | Q13948 Q75MT4 | NM_001202546.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000487284.1 | CUX1-010 | 1566 | 241aa | ENSP00000453648.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000560541.1 | CUX1-019 | 3492 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000558836.1 | CUX1-021 | 2965 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000606749.1 | CUX1-023 | 601 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000558469.1 | CUX1-020 | 588 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000465461.2 | CUX1-014 | 502 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000497815.1 | CUX1-012 | 947 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000485792.1 | CUX1-013 | 564 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000607092.1 | CUX1-022 | 559 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
