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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX9-AS1 ENSG00000234899

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Description

SOX9 antisense RNA 1 [Source:HGNC Symbol;Acc:49321]

Gene Synonyms

FLJ37644

Location

Chromosome 17: 70,033,455-70,217,977 reverse strand.

GRCh37:CM000679.1

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq	Flags
ENST00000533232.1	SOX9-AS1-012	1739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENST00000533996.1	SOX9-AS1-006	1001	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENST00000532249.1	SOX9-AS1-011	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENST00000434703.1	SOX9-AS1-002	3032	No protein	-	lincRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000602213.1	SOX9-AS1-017	821	No protein	-	lincRNA		-	-
ENST00000414600.1	SOX9-AS1-010	742	No protein	-	lincRNA		-	-
ENST00000412640.2	SOX9-AS1-016	635	No protein	-	lincRNA		-	-
ENST00000424417.2	SOX9-AS1-015	576	No protein	-	lincRNA		-	-
ENST00000440093.2	SOX9-AS1-004	468	No protein	-	lincRNA		-	-
ENST00000588177.1	SOX9-AS1-013	465	No protein	-	lincRNA		-	-
ENST00000533179.1	SOX9-AS1-007	460	No protein	-	lincRNA		-	-
ENST00000446332.1	SOX9-AS1-014	443	No protein	-	lincRNA		-	-
ENST00000533039.2	SOX9-AS1-005	426	No protein	-	lincRNA		-	-
ENST00000443037.1	SOX9-AS1-008	394	No protein	-	lincRNA		-	-
ENST00000529667.1	SOX9-AS1-003	340	No protein	-	lincRNA		-	-

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Summary

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