Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:8919]
Gene Synonyms
MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location
Chromosome HSCHR6_MHC_SSTO: 33,517,537-33,523,618 forward strand.
GRCh37:GL000256.1
View this gene on the primary assembly.
About this gene
This gene has 13 transcripts (splice variants) and 1 gene allele.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000427869.2 | PHF1-002 | 2330 | 567aa | ENSP00000391901.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AB22 A2AB23 O43189 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000454914.2 | PHF1-001 | 2224 | 457aa | ENSP00000407295.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AB22 A2AB23 O43189 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000475137.1 | PHF1-011 | 1189 | 54aa | ENSP00000434774.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000423868.1 | PHF1-013 | 862 | 181aa | ENSP00000399226.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AB25 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000447305.1 | PHF1-006 | 836 | 227aa | ENSP00000396023.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AB22 A2AB23 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000419154.1 | PHF1-012 | 728 | 243aa | ENSP00000413510.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000421466.1 | PHF1-005 | 609 | 145aa | ENSP00000395839.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AB22 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000495185.1 | PHF1-004 | 1930 | 393aa | ENSP00000433516.1 | Nonsense mediated decay | A2AB22 A2AB23 | - | - | |
| ENST00000487460.1 | PHF1-003 | 2283 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000465760.1 | PHF1-007 | 461 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000480565.1 | PHF1-009 | 1099 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000482971.1 | PHF1-010 | 933 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000496666.1 | PHF1-008 | 849 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
