Description
tripartite motif containing 39 [Source:HGNC Symbol;Acc:10065]
Gene Synonyms
RNF23, TFP, TRIM39B, TRIM39R
Location
Chromosome 6: 30,294,256-30,311,506 forward strand.
GRCh37:CM000668.1
View alleles of this gene on alternative sequences
About this gene
This gene has 12 transcripts (splice variants), 1 gene allele, 125 orthologues and 80 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000376656.4 | TRIM39-201 | 3338 | 518aa | ENSP00000365844.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS34377 | A2AAZ2 A2AAZ3 A2AAZ4 A2AAZ5 Q9HCM9 | NM_021253.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000376659.5 | TRIM39-003 | 3535 | 488aa | ENSP00000365847.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS34378 | A2AAZ2 A2AAZ3 A2AAZ4 A2AAZ5 Q9HCM9 | NM_172016.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000396551.3 | TRIM39-004 | 3249 | 488aa | ENSP00000379800.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS34378 | A2AAZ2 A2AAZ3 A2AAZ4 A2AAZ5 Q9HCM9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000540416.1 | TRIM39-202 | 3248 | 488aa | ENSP00000439400.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AAZ2 A2AAZ3 A2AAZ4 A2AAZ5 F5H297 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000396548.1 | TRIM39-001 | 3198 | 488aa | ENSP00000379797.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS34378 | A2AAZ2 A2AAZ3 A2AAZ4 A2AAZ5 Q9HCM9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000396547.1 | TRIM39-002 | 3187 | 518aa | ENSP00000379796.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS34377 | A2AAZ2 A2AAZ3 A2AAZ4 A2AAZ5 Q9HCM9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000428728.1 | TRIM39-006 | 1013 | 260aa | ENSP00000406019.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AAZ2 A2AAZ3 A2AAZ4 A2AAZ5 A2AAZ6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000458516.1 | TRIM39-005 | 1003 | 144aa | ENSP00000405928.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AAZ2 A2AAZ3 A2AAZ4 A2AAZ5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000420746.1 | TRIM39-009 | 708 | 227aa | ENSP00000388224.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000440271.1 | TRIM39-010 | 588 | 74aa | ENSP00000394768.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AAZ2 A2AAZ3 A2AAZ4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000428555.1 | TRIM39-008 | 459 | 48aa | ENSP00000397952.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AAZ2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000428404.1 | TRIM39-007 | 427 | 59aa | ENSP00000405498.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A2AAZ2 A2AAZ3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, |
