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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SYS1 ENSG00000204070

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Description

SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:16162]

Gene Synonyms

C20orf169, dJ453C12.4, dJ453C12.4.1

Location

Chromosome 20: 43,990,577-44,005,438 forward strand.

GRCh37:CM000682.1

About this gene

This gene has 8 transcripts (splice variants), 193 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000243918.5	SYS1-001	2862	156aa	ENSP00000243918.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13351	E7ETM6 Q5QPU8 Q8N2H4	NM_033542.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000426004.1	SYS1-006	2915	76aa	ENSP00000416506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56192	Q8N2H4	NM_001099791.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000372727.1	SYS1-005	813	156aa	ENSP00000361812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13351	E7ETM6 Q5QPU8 Q8N2H4	NM_001197129.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000414310.1	SYS1-002	795	135aa	ENSP00000403071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ETM6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000453003.1	SYS1-003	433	118aa	ENSP00000406879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5QPU8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000457307.1	SYS1-007	941	57aa	ENSP00000397601.1	Nonsense mediated decay		F8WB21	-	-
ENST00000479779.1	SYS1-008	1022	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461890.1	SYS1-009	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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