Description
DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:HGNC Symbol;Acc:18676]
Gene Synonyms
DDX42P, RHELP, RNAHP, SF3b125
Location
Chromosome 17: 61,850,963-61,896,677 forward strand.
GRCh37:CM000679.1
About this gene
This gene has 19 transcripts (splice variants), 209 orthologues and 38 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000578681.1 | DDX42-001 | 4337 | 938aa | ENSP00000464050.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32704 | B3KMI4 J3QRI2 Q86XP3 | NM_007372.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000583590.1 | DDX42-002 | 4148 | 938aa | ENSP00000463561.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32704 | B3KMI4 J3QRI2 Q86XP3 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000389924.2 | DDX42-201 | 3921 | 938aa | ENSP00000374574.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32704 | B3KMI4 J3QRI2 Q86XP3 | NM_203499.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000457800.2 | DDX42-202 | 3735 | 938aa | ENSP00000390121.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32704 | B3KMI4 J3QRI2 Q86XP3 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000359353.5 | DDX42-010 | 2783 | 819aa | ENSP00000352308.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B3KMI4 Q86XP3 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000581135.1 | DDX42-009 | 589 | 104aa | ENSP00000464232.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3QRI2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000577940.2 | DDX42-006 | 1427 | 99aa | ENSP00000461957.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000578137.1 | DDX42-012 | 857 | 159aa | ENSP00000463038.1 | Nonsense mediated decay | J3KTK9 J3QRI2 | - | - | |
| ENST00000584261.1 | DDX42-013 | 510 | 70aa | ENSP00000462174.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000582985.1 | DDX42-018 | 543 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000584010.1 | DDX42-003 | 3929 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000578593.1 | DDX42-005 | 2919 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000581767.1 | DDX42-008 | 2244 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000579511.1 | DDX42-014 | 594 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000584951.1 | DDX42-016 | 591 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000577978.1 | DDX42-015 | 581 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000579539.1 | DDX42-017 | 571 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000580108.1 | DDX42-011 | 545 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000581477.1 | DDX42-004 | 494 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
