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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HOXC6 ENSG00000197757

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Description

homeobox C6 [Source:HGNC Symbol;Acc:5128]

Gene Synonyms

CP25, HHO.C8, HOX3, HOX3C

Location

Chromosome 12: 54,384,408-54,424,607 forward strand.

GRCh37:CM000674.1

About this gene

This gene has 4 transcripts (splice variants), 214 orthologues and 42 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000243108.4	HOXC6-001	1733	235aa	ENSP00000243108.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8871	D6RBH4 P09630	NM_004503.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000394331.3	HOXC6-002	2943	153aa	ENSP00000377864.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41792	D6RBH4 P09630	NM_153693.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000504315.1	HOXC6-003	538	51aa	ENSP00000424124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBH4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000509328.1	HOXC6-004	358	71aa	ENSP00000423898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC34	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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