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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LSAMP ENSG00000185565

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Description

limbic system-associated membrane protein [Source:HGNC Symbol;Acc:6705]

Gene Synonyms

IGLON3, LAMP

Location

Chromosome 3: 115,521,235-117,716,095 reverse strand.

GRCh37:CM000665.1

About this gene

This gene has 7 transcripts (splice variants), 221 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000490035.2	LSAMP-001	9446	338aa	ENSP00000419000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2982	Q13449	NM_002338.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000333617.4	LSAMP-002	1561	345aa	ENSP00000328455.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BLU2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000539563.1	LSAMP-201	1077	358aa	ENSP00000443429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5G1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000474851.1	LSAMP-006	772	205aa	ENSP00000418506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J5G3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000498645.1	LSAMP-003	586	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475403.2	LSAMP-005	477	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473171.1	LSAMP-004	640	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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