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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PCDH9 ENSG00000184226

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Description

protocadherin 9 [Source:HGNC Symbol;Acc:8661]

Location

Chromosome 13: 66,876,967-67,804,468 reverse strand.

GRCh37:CM000675.1

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 33 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000544246.1	PCDH9-202	6226	1237aa	ENSP00000442186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9444	Q9HC56	NM_203487.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000456367.1	PCDH9-001	5834	1203aa	ENSP00000401699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9443	Q9HC56	NM_020403.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000377865.2	PCDH9-003	5667	1237aa	ENSP00000367096.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9444	Q9HC56	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000377861.3	PCDH9-002	4397	1032aa	ENSP00000367092.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VT82	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000328454.5	PCDH9-201	3663	1203aa	ENSP00000332060.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9443	Q9HC56	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

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Summary

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