Description
SATB homeobox 1 [Source:HGNC Symbol;Acc:10541]
Location
Chromosome 3: 18,386,879-18,487,080 reverse strand.
GRCh37:CM000665.1
About this gene
This gene has 18 transcripts (splice variants), 215 orthologues, 1 paralogue and is associated with 3 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000417717.2 | SATB1-004 | 4589 | 795aa | ENSP00000399518.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS56242 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_001195470.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000338745.6 | SATB1-001 | 7810 | 763aa | ENSP00000341024.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2631 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_002971.4 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000454909.2 | SATB1-002 | 2968 | 763aa | ENSP00000399708.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2631 | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 Q01826 | NM_001131010.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000440737.1 | SATB1-008 | 975 | 224aa | ENSP00000402982.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JGL9 C9JLL5 C9JP21 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000452260.2 | SATB1-015 | 939 | 172aa | ENSP00000406727.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9IZC5 C9J3I0 C9J7F3 C9JGL9 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000493952.2 | SATB1-009 | 626 | 82aa | ENSP00000453908.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YN86 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000415069.1 | SATB1-006 | 594 | 166aa | ENSP00000390529.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JGL9 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000414509.1 | SATB1-011 | 583 | 116aa | ENSP00000408871.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000444341.1 | SATB1-012 | 579 | 70aa | ENSP00000391344.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000457005.1 | SATB1-014 | 564 | 129aa | ENSP00000398072.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J3I0 C9J7F3 C9JLL5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000450898.1 | SATB1-013 | 464 | 8aa | ENSP00000394520.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000475083.1 | SATB1-016 | 558 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000606296.1 | SATB1-022 | 4200 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000491519.3 | SATB1-017 | 996 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000467628.1 | SATB1-020 | 551 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000487699.1 | SATB1-010 | 477 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000482788.1 | SATB1-018 | 406 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000476178.1 | SATB1-021 | 361 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
