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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HCLS1 ENSG00000180353

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Description

hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:4844]

Gene Synonyms

CTTNL, HS1

Location

Chromosome 3: 121,350,246-121,379,774 reverse strand.

GRCh37:CM000665.1

About this gene

This gene has 12 transcripts (splice variants) and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000314583.3	HCLS1-001	2000	486aa	ENSP00000320176.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3003	P14317	NM_005335.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428394.2	HCLS1-004	1560	449aa	ENSP00000387645.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVW7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495491.1	HCLS1-002	1219	209aa	ENSP00000418299.1	Nonsense mediated decay		B4DQ69	-	-
ENST00000464274.1	HCLS1-014	552	75aa	ENSP00000420507.1	Nonsense mediated decay		F8WDD5	-	-
ENST00000497391.1	HCLS1-010	533	76aa	ENSP00000419614.1	Nonsense mediated decay		F8WEZ6	-	-
ENST00000473883.1	HCLS1-006	2710	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487290.1	HCLS1-003	1078	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000488033.1	HCLS1-009	584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468693.1	HCLS1-013	502	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000481314.1	HCLS1-011	1069	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491824.1	HCLS1-007	646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479994.1	HCLS1-008	450	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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