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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SSC5D ENSG00000179954

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Description

scavenger receptor cysteine rich domain containing (5 domains) [Source:HGNC Symbol;Acc:26641]

Gene Synonyms

FLJ35258

Location

Chromosome 19: 55,999,771-56,030,465 forward strand.

GRCh37:CM000681.1

About this gene

This gene has 5 transcripts (splice variants), 400 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000389623.6	SSC5D-001	4845	1573aa	ENSP00000374274.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46196	A1L4H1 M0QZ17	NM_001144950.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000587166.1	SSC5D-003	3017	951aa	ENSP00000467252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59424	K7EP70 M0QZ17	NM_001195267.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000594321.1	SSC5D-005	457	90aa	ENSP00000470226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QZ17	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000589020.1	SSC5D-004	354	118aa	ENSP00000467434.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPL3	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000588254.1	SSC5D-002	3085	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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