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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: C12orf42 ENSG00000179088

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Description

chromosome 12 open reading frame 42 [Source:HGNC Symbol;Acc:24729]

Gene Synonyms

FLJ25323

Location

Chromosome 12: 103,631,369-103,889,749 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 17 transcripts (splice variants) and 57 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378113.2	C12orf42-202	1462	360aa	ENSP00000367353.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44963	F8VV63 F8W1Y6 Q96LP6	NM_001278419.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000548048.1	C12orf42-003	1532	293aa	ENSP00000449362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VV63	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000548883.1	C12orf42-001	1336	360aa	ENSP00000447908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44963	F8VV63 F8W1Y6 Q96LP6	NM_198521.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000552578.1	C12orf42-007	831	207aa	ENSP00000447795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1Y6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000315192.8	C12orf42-201	412	107aa	ENSP00000324984.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96LP6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000547347.1	C12orf42-004	2090	107aa	ENSP00000446908.1	Nonsense mediated decay		Q96LP6	-	-
ENST00000551134.1	C12orf42-002	1557	90aa	ENSP00000449447.1	Nonsense mediated decay		F8VX61	-	-
ENST00000548789.1	C12orf42-008	936	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000546526.1	C12orf42-006	866	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552977.1	C12orf42-010	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548196.1	C12orf42-005	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550650.1	C12orf42-011	547	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000550497.1	C12orf42-009	495	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000549927.1	C12orf42-013	432	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552372.1	C12orf42-012	430	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547470.1	C12orf42-015	364	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000551303.1	C12orf42-014	237	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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