Description
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 [Source:HGNC Symbol;Acc:9247]
Gene Synonyms
KIAA0654, LPNA3, MGC126567, MGC126569
Location
Chromosome 19: 49,622,646-49,654,283 forward strand.
GRCh37:CM000681.1
About this gene
This gene has 13 transcripts (splice variants), 277 orthologues and 5 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000334186.4 | PPFIA3-001 | 4733 | 1194aa | ENSP00000335614.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS12758 | O75145 R4GNF1 | NM_003660.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000602351.1 | PPFIA3-006 | 4341 | 1185aa | ENSP00000473622.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | O75145 R4GNF1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000602848.1 | PPFIA3-007 | 1638 | 277aa | ENSP00000473418.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | O75145 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000602897.1 | PPFIA3-008 | 1615 | 243aa | ENSP00000473423.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | O75145 | - | - | |
| ENST00000602509.1 | PPFIA3-003 | 547 | 146aa | ENSP00000473621.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | R4GNF1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000602655.1 | PPFIA3-002 | 3493 | 652aa | ENSP00000473470.1 | Nonsense mediated decay | R4GN36 R4GNF1 | - | - | |
| ENST00000421230.2 | PPFIA3-005 | 2236 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000602716.1 | PPFIA3-004 | 2020 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000602783.1 | PPFIA3-009 | 980 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000602726.1 | PPFIA3-012 | 805 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000602905.1 | PPFIA3-013 | 799 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000602492.1 | PPFIA3-010 | 740 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000602800.1 | PPFIA3-011 | 562 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
