Description
serine hydroxymethyltransferase 1 (soluble) [Source:HGNC Symbol;Acc:10850]
Gene Synonyms
CSHMT, MGC15229, MGC24556, SHMT, hsa-mir-6778
Location
Chromosome 17: 18,231,187-18,266,856 reverse strand.
GRCh37:CM000679.1
About this gene
This gene has 11 transcripts (splice variants) and 1 paralogue.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000316694.3 | SHMT1-001 | 2464 | 483aa | ENSP00000318868.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11196 | B4DPM9 J3KRZ5 P34896 Q9UMC9 | NM_004169.3 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000352886.6 | SHMT1-201 | 2136 | 403aa | ENSP00000345881.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRZ5 P34896 Q9UMC9 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000539052.1 | SHMT1-202 | 1759 | 345aa | ENSP00000440089.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS62112 | B4DPM9 Q9UMC9 | NM_001281786.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000354098.3 | SHMT1-003 | 1656 | 444aa | ENSP00000318805.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11197 | J3KRZ5 P34896 Q9UMC9 | NM_148918.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000582653.1 | SHMT1-009 | 879 | 167aa | ENSP00000462227.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRZ5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000583780.1 | SHMT1-007 | 332 | 1aa | ENSP00000462041.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000580002.1 | SHMT1-006 | 1759 | 128aa | ENSP00000462043.1 | Nonsense mediated decay | J3KRK5 | - | - | |
| ENST00000582352.1 | SHMT1-010 | 2756 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000395684.1 | SHMT1-004 | 2652 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000579558.1 | SHMT1-008 | 1077 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000395682.3 | SHMT1-005 | 570 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
