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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LSM1 ENSG00000175324

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Description

LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:20472]

Gene Synonyms

CASM, YJL124C

Location

Chromosome 8: 38,020,839-38,034,248 reverse strand.

GRCh37:CM000670.1

About this gene

This gene has 5 transcripts (splice variants), 215 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000311351.4	LSM1-001	1147	133aa	ENSP00000310596.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6103	O15116	NM_014462.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000520755.1	LSM1-002	975	44aa	ENSP00000430021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RH18	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000523511.1	LSM1-005	700	44aa	ENSP00000428307.1	Nonsense mediated decay		E5RJ47	-	-
ENST00000522515.1	LSM1-003	1568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520286.1	LSM1-004	776	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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