Description
Zic family member 4 [Source:HGNC Symbol;Acc:20393]
Location
Chromosome 3: 147,103,833-147,124,647 reverse strand.
GRCh37:CM000665.1
About this gene
This gene has 17 transcripts (splice variants), 201 orthologues, 14 paralogues and is associated with 2 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000525172.2 | ZIC4-202 | 4152 | 384aa | ENSP00000435509.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54652 | B3KPI4 C9J6T3 C9JD04 C9JZU7 Q8N9L1 | NM_001168378.1 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000383075.3 | ZIC4-001 | 4331 | 334aa | ENSP00000372553.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43160 | B3KPI4 C9J6T3 C9JD04 C9JZU7 Q8N9L1 | NM_032153.5 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000425731.3 | ZIC4-201 | 3979 | 372aa | ENSP00000397695.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54653 | B3KPI4 C9J6T3 C9JD04 C9JZU7 Q8N9L1 | NM_001168379.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000484399.1 | ZIC4-004 | 1774 | 334aa | ENSP00000417855.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43160 | B3KPI4 C9J6T3 C9JD04 C9JZU7 Q8N9L1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000473123.1 | ZIC4-003 | 1481 | 334aa | ENSP00000420775.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS43160 | B3KPI4 C9J6T3 C9JD04 C9JZU7 Q8N9L1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000462748.2 | ZIC4-002 | 929 | 229aa | ENSP00000420627.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J6T3 C9JD04 C9JZU7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000491672.1 | ZIC4-009 | 925 | 128aa | ENSP00000418277.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58857 | Q8N9L1 | NM_001243256.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000463250.1 | ZIC4-010 | 565 | 68aa | ENSP00000419727.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JZU7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000484586.1 | ZIC4-011 | 500 | 77aa | ENSP00000418343.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J6T3 C9JZU7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000472749.2 | ZIC4-007 | 3550 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000464144.1 | ZIC4-008 | 845 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000463850.1 | ZIC4-014 | 834 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000475502.1 | ZIC4-015 | 708 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000464502.1 | ZIC4-013 | 610 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000480015.1 | ZIC4-017 | 534 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000494569.1 | ZIC4-006 | 3317 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000493664.1 | ZIC4-005 | 2965 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
