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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SSSCA1 ENSG00000173465

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Description

Sjogren syndrome/scleroderma autoantigen 1 [Source:HGNC Symbol;Acc:11328]

Gene Synonyms

p27

Location

Chromosome 11: 65,337,901-65,341,413 forward strand.

GRCh37:CM000673.1

About this gene

This gene has 7 transcripts (splice variants) and 177 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000309328.3	SSSCA1-001	698	199aa	ENSP00000312318.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8104	G3V1B8 H0YEB6 O60232	NM_006396.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000533115.1	SSSCA1-006	1077	193aa	ENSP00000435432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1B8 H0YEB6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000531405.1	SSSCA1-002	879	162aa	ENSP00000434381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1B8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000527920.1	SSSCA1-005	806	60aa	ENSP00000432938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN57	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000526433.1	SSSCA1-007	739	107aa	ENSP00000435982.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000526877.1	SSSCA1-004	713	81aa	ENSP00000431666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PK41	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000527413.1	SSSCA1-003	532	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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