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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SYNPO2 ENSG00000172403

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Description

synaptopodin 2 [Source:HGNC Symbol;Acc:17732]

Gene Synonyms

MYOPODIN

Location

Chromosome 4: 119,809,996-119,982,402 forward strand.

GRCh37:CM000666.1

About this gene

This gene has 5 transcripts (splice variants), 269 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307142.4	SYNPO2-001	7295	1261aa	ENSP00000306015.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34054	Q9UMS6	NM_133477.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000429713.2	SYNPO2-003	7242	1093aa	ENSP00000395143.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47129	B4DLE4 Q9UMS6	NM_001128933.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000504178.1	SYNPO2-004	6779	1155aa	ENSP00000425496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000434046.2	SYNPO2-002	3524	1109aa	ENSP00000390965.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47128	Q9UMS6	NM_001128934.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000448416.2	SYNPO2-201	1332	123aa	ENSP00000412623.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E258	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

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Summary

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