Description
LIM and senescent cell antigen-like domains 1 [Source:HGNC Symbol;Acc:6616]
Gene Synonyms
PINCH, PINCH-1, PINCH1
Location
Chromosome 2: 109,150,857-109,303,702 forward strand.
GRCh37:CM000664.1
About this gene
This gene has 17 transcripts (splice variants), 199 orthologues and 3 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000542845.1 | LIMS1-202 | 1459 | 387aa | ENSP00000446121.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54385 | F8WB59 P48059 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000393310.1 | LIMS1-001 | 4392 | 325aa | ENSP00000376987.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2078 | F8WB59 P48059 | NM_001193488.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000338045.3 | LIMS1-014 | 1876 | 325aa | ENSP00000337598.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2078 | F8WB59 P48059 | NM_001193485.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000544547.1 | LIMS1-203 | 1767 | 337aa | ENSP00000437912.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54382 | C9JF46 F8WB59 P48059 | NM_001193483.2 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000409441.1 | LIMS1-003 | 1627 | 362aa | ENSP00000387264.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54384 | F8WB59 P48059 | NM_001193484.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000410093.1 | LIMS1-006 | 1526 | 329aa | ENSP00000386926.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54383 | F8WB59 P48059 | NM_001193482.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000332345.6 | LIMS1-002 | 1235 | 325aa | ENSP00000331775.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2078 | F8WB59 P48059 | NM_004987.5 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000428064.1 | LIMS1-007 | 637 | 176aa | ENSP00000390862.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JF46 F8WB59 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000393314.2 | LIMS1-201 | 439 | 117aa | ENSP00000376990.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8MUY2 F8WB59 F8WC86 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000422797.1 | LIMS1-004 | 1544 | 100aa | ENSP00000402322.1 | Nonsense mediated decay | F8WB59 F8WE10 | - | - | |
| ENST00000434274.1 | LIMS1-011 | 779 | 20aa | ENSP00000410751.1 | Nonsense mediated decay | F8WB59 | - | - | |
| ENST00000414829.1 | LIMS1-005 | 439 | 55aa | ENSP00000399267.1 | Nonsense mediated decay | F8WB59 F8WC86 | - | - | |
| ENST00000462817.1 | LIMS1-009 | 566 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000449684.2 | LIMS1-008 | 492 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000480744.1 | LIMS1-012 | 414 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000474038.1 | LIMS1-010 | 679 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000496653.1 | LIMS1-013 | 626 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
