Description
LIM and senescent cell antigen-like domains 1 [Source:HGNC Symbol;Acc:6616]
Gene Synonyms
PINCH, PINCH-1, PINCH1
Location
Chromosome 2: 109,150,857-109,303,702 forward strand.
GRCh37:CM000664.1
About this gene
This gene has 17 transcripts (splice variants) and 14 paralogues.
Transcripts
Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|---|
ENST00000393310.1 | LIMS1-001 | 4392 | 325aa | ENSP00000376987.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2078 | F8WB59 P48059 | NM_001193488.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000338045.3 | LIMS1-014 | 1876 | 325aa | ENSP00000337598.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2078 | F8WB59 P48059 | NM_001193485.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000544547.1 | LIMS1-203 | 1767 | 337aa | ENSP00000437912.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54382 | C9JF46 F8WB59 P48059 | NM_001193483.2 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000409441.1 | LIMS1-003 | 1627 | 362aa | ENSP00000387264.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54384 | F8WB59 P48059 | NM_001193484.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000410093.1 | LIMS1-006 | 1526 | 329aa | ENSP00000386926.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54383 | F8WB59 P48059 | NM_001193482.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000542845.1 | LIMS1-202 | 1459 | 387aa | ENSP00000446121.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54385 | F8WB59 P48059 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000332345.6 | LIMS1-002 | 1235 | 325aa | ENSP00000331775.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2078 | F8WB59 P48059 | NM_004987.5 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000428064.1 | LIMS1-007 | 637 | 176aa | ENSP00000390862.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JF46 F8WB59 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000393314.2 | LIMS1-201 | 439 | 117aa | ENSP00000376990.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8MUY2 F8WB59 F8WC86 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
ENST00000422797.1 | LIMS1-004 | 1544 | 100aa | ENSP00000402322.1 | Nonsense mediated decay | F8WB59 F8WE10 | - | - | |
ENST00000434274.1 | LIMS1-011 | 779 | 20aa | ENSP00000410751.1 | Nonsense mediated decay | F8WB59 | - | - | |
ENST00000414829.1 | LIMS1-005 | 439 | 55aa | ENSP00000399267.1 | Nonsense mediated decay | F8WB59 F8WC86 | - | - | |
ENST00000462817.1 | LIMS1-009 | 566 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000449684.2 | LIMS1-008 | 492 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000480744.1 | LIMS1-012 | 414 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000474038.1 | LIMS1-010 | 679 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000496653.1 | LIMS1-013 | 626 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |