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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: COL22A1 ENSG00000169436

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Description

collagen, type XXII, alpha 1 [Source:HGNC Symbol;Acc:22989]

Location

Chromosome 8: 139,600,478-139,926,249 reverse strand.

GRCh37:CM000670.1

About this gene

This gene has 7 transcripts (splice variants), 137 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303045.6	COL22A1-001	6346	1626aa	ENSP00000303153.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6376	Q8NFW1	NM_152888.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000435777.1	COL22A1-201	6285	1606aa	ENSP00000387655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8NFW1	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000522546.1	COL22A1-007	554	65aa	ENSP00000428244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAX7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000341807.4	COL22A1-003	3584	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487854.1	COL22A1-004	697	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517515.1	COL22A1-006	661	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484387.1	COL22A1-002	572	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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