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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LGALS9 ENSG00000168961

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Description

lectin, galactoside-binding, soluble, 9 [Source:HGNC Symbol;Acc:6570]

Gene Synonyms

HUAT, LGALS9A

Location

Chromosome 17: 25,956,824-25,976,586 forward strand.

GRCh37:CM000679.1

About this gene

This gene has 18 transcripts (splice variants) and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000395473.2	LGALS9-001	3114	355aa	ENSP00000378856.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11222	K7EPS0 O00182	NM_009587.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000302228.5	LGALS9-002	3018	323aa	ENSP00000306228.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32592	O00182	NM_002308.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000310394.5	LGALS9-201	2975	311aa	ENSP00000312259.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8WYQ7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413914.2	LGALS9-202	1466	221aa	ENSP00000393695.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DWP7 K7EPS0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000313648.6	LGALS9-005	1378	246aa	ENSP00000318214.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W9W4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581710.1	LGALS9-014	754	137aa	ENSP00000462382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577392.1	LGALS9-010	598	175aa	ENSP00000462359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KS82	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584661.1	LGALS9-015	594	115aa	ENSP00000467505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPS0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578944.1	LGALS9-016	377	125aa	ENSP00000464581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QS92	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000467111.1	LGALS9-003	1512	75aa	ENSP00000462668.1	Nonsense mediated decay		J3QKK6	-	-
ENST00000580779.1	LGALS9-008	851	75aa	ENSP00000463125.1	Nonsense mediated decay		J3QKK6	-	-
ENST00000448970.2	LGALS9-004	449	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486774.1	LGALS9-006	2951	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481514.1	LGALS9-007	2349	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584386.1	LGALS9-013	712	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000579930.1	LGALS9-011	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000579402.1	LGALS9-009	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000583671.1	LGALS9-012	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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