Description
autophagy related 4B, cysteine peptidase [Source:HGNC Symbol;Acc:20790]
Gene Synonyms
APG4B, AUTL1, DKFZp586D1822, KIAA0943
Location
Chromosome 2: 242,576,628-242,613,272 forward strand.
GRCh37:CM000664.1
About this gene
This gene has 27 transcripts (splice variants), 208 orthologues and 3 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000404914.3 | ATG4B-002 | 2878 | 393aa | ENSP00000384259.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS46564 | C9J1C1 C9J3C0 C9JVD5 F8WD71 Q9Y4P1 | NM_178326.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000405546.3 | ATG4B-001 | 3294 | 380aa | ENSP00000383964.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS46565 | C9J1C1 C9J3C0 C9JVD5 Q9Y4P1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000402096.1 | ATG4B-006 | 1685 | 331aa | ENSP00000384661.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1C1 C9J3C0 C9JVD5 Q9Y4P1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000474739.2 | ATG4B-202 | 1654 | 379aa | ENSP00000442378.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1C1 C9J3C0 C9JVD5 F5H7P2 F8WD71 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000396411.3 | ATG4B-201 | 1384 | 319aa | ENSP00000379692.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1C1 C9J3C0 C9JVD5 F8WD71 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000425239.1 | ATG4B-023 | 807 | 266aa | ENSP00000409895.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1C1 C9JQ72 C9JVD5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000400771.3 | ATG4B-025 | 663 | 219aa | ENSP00000383582.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JIK8 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000430617.2 | ATG4B-020 | 623 | 105aa | ENSP00000407389.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1C1 C9JVD5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000428861.1 | ATG4B-027 | 580 | 193aa | ENSP00000404783.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H7C2A6 | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000419606.1 | ATG4B-015 | 553 | 66aa | ENSP00000400050.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1C1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000429899.1 | ATG4B-026 | 524 | 147aa | ENSP00000410526.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J1C1 C9J3C0 C9JVD5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000344376.5 | ATG4B-005 | 1566 | 76aa | ENSP00000344960.5 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000400772.2 | ATG4B-011 | 625 | 88aa | ENSP00000383583.2 | Nonsense mediated decay | F2Z2K8 | - | - | |
| ENST00000415107.1 | ATG4B-022 | 356 | 88aa | ENSP00000390597.1 | Nonsense mediated decay | F2Z2K8 | - | - | |
| ENST00000491867.1 | ATG4B-010 | 435 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000482507.1 | ATG4B-004 | 2414 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000494465.1 | ATG4B-003 | 2365 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000475693.1 | ATG4B-008 | 2237 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000483778.1 | ATG4B-012 | 1103 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000493618.1 | ATG4B-024 | 899 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000460211.1 | ATG4B-028 | 871 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000494132.1 | ATG4B-029 | 828 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000475195.1 | ATG4B-014 | 762 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000468018.1 | ATG4B-021 | 721 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000465399.1 | ATG4B-016 | 581 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000479554.1 | ATG4B-013 | 556 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000479941.1 | ATG4B-030 | 374 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
