Description
U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453]
Gene Synonyms
FP793, RN, RNU2AF1, U2AF35, U2AFBP
Location
Chromosome 21: 44,513,066-44,527,697 reverse strand.
GRCh37:CM000683.1
About this gene
This gene has 12 transcripts (splice variants), 270 orthologues, 2 paralogues and is associated with 68 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000291552.4 | U2AF1-001 | 962 | 240aa | ENSP00000291552.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS13694 | Q01081 | NM_006758.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000459639.1 | U2AF1-004 | 1675 | 167aa | ENSP00000418705.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS42948 | Q01081 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000398137.1 | U2AF1-201 | 1019 | 167aa | ENSP00000381205.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS42948 | Q01081 | NM_001025204.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000380276.2 | U2AF1-002 | 940 | 240aa | ENSP00000369629.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33574 | Q01081 Q69YM7 | NM_001025203.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000464750.1 | U2AF1-003 | 966 | 75aa | ENSP00000420672.1 | Nonsense mediated decay | Q01081 | - | - | |
| ENST00000486519.1 | U2AF1-010 | 682 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000475639.1 | U2AF1-005 | 4694 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000496462.1 | U2AF1-006 | 3973 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000478282.1 | U2AF1-007 | 3344 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000471250.1 | U2AF1-008 | 1676 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000468039.1 | U2AF1-011 | 609 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000463599.1 | U2AF1-009 | 338 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
