Description
vacuolar protein sorting 8 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29122]
Gene Synonyms
FLJ32099, KIAA0804
Location
Chromosome 3: 184,529,931-184,770,402 forward strand.
GRCh37:CM000665.1
About this gene
This gene has 27 transcripts (splice variants), 219 orthologues and 2 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000437079.3 | VPS8-202 | 5047 | 1428aa | ENSP00000397879.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS46971 | C9JIA0 C9JKL0 C9JPI1 Q8N3P4 | NM_001009921.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000287546.4 | VPS8-201 | 5047 | 1428aa | ENSP00000287546.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JIA0 C9JJN9 C9JKL0 C9JPI1 | NM_015303.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000436792.2 | VPS8-002 | 5011 | 1426aa | ENSP00000404704.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS46972 | C9JG07 C9JIA0 C9JKL0 C9JPI1 Q8N3P4 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000446204.2 | VPS8-003 | 4721 | 1336aa | ENSP00000405483.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JG07 C9JIA0 C9JKL0 C9JPI1 Q8N3P4 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000424463.2 | VPS8-004 | 2359 | 164aa | ENSP00000389480.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JIA0 C9JKL0 C9JP71 C9JPI1 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000422105.1 | VPS8-010 | 811 | 202aa | ENSP00000415161.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JG07 C9JIA0 C9JKL0 C9JPI1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000453056.1 | VPS8-008 | 661 | 74aa | ENSP00000394018.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JKL0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000445089.1 | VPS8-012 | 592 | 121aa | ENSP00000416150.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JIA0 C9JKL0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000441141.1 | VPS8-009 | 549 | 140aa | ENSP00000409957.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9JIA0 C9JKL0 C9JPI1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000426319.1 | VPS8-005 | 185 | 62aa | ENSP00000416101.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000458721.1 | VPS8-020 | 946 | 108aa | ENSP00000409115.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000424721.1 | VPS8-011 | 653 | 68aa | ENSP00000397553.1 | Nonsense mediated decay | F8WB24 | - | - | |
| ENST00000452666.1 | VPS8-013 | 578 | 162aa | ENSP00000413778.1 | Nonsense mediated decay | H7C3U0 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000421069.1 | VPS8-019 | 552 | 59aa | ENSP00000400267.1 | Nonsense mediated decay | H7C1G7 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000452140.1 | VPS8-007 | 392 | 57aa | ENSP00000393070.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000463687.1 | VPS8-022 | 568 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000485024.1 | VPS8-024 | 477 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000471655.1 | VPS8-026 | 434 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000475580.1 | VPS8-025 | 318 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000492449.1 | VPS8-006 | 2980 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000495190.1 | VPS8-021 | 756 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000469713.1 | VPS8-017 | 668 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000465213.1 | VPS8-018 | 656 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000469479.1 | VPS8-014 | 583 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000465818.1 | VPS8-016 | 572 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000488255.1 | VPS8-023 | 564 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000460158.1 | VPS8-015 | 366 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
