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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CNTN4 ENSG00000144619

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Description

contactin 4 [Source:HGNC Symbol;Acc:2174]

Gene Synonyms

AXCAM, BIG-2

Location

Chromosome 3: 2,140,497-3,099,645 forward strand.

GRCh37:CM000665.1

About this gene

This gene has 19 transcripts (splice variants), 242 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000397461.1	CNTN4-001	5198	1026aa	ENSP00000380602.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43041	C9JGK9 C9JMQ2 G3XAD4 Q8IWV2	NM_001206955.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000418658.1	CNTN4-009	5093	1026aa	ENSP00000396010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43041	C9JGK9 C9JMQ2 G3XAD4 Q8IWV2	NM_175607.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427331.1	CNTN4-202	4985	1026aa	ENSP00000413642.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43041	C9JGK9 C9JMQ2 G3XAD4 Q8IWV2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000358480.3	CNTN4-201	2846	807aa	ENSP00000351267.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3XAD4	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000397459.2	CNTN4-002	2322	698aa	ENSP00000380600.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2558	Q8IWV2	NM_175613.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000448906.2	CNTN4-203	2279	698aa	ENSP00000392077.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2558	Q8IWV2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000473845.1	CNTN4-015	726	143aa	ENSP00000422120.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y8U1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000422330.1	CNTN4-004	658	116aa	ENSP00000408594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGK9 C9JMQ2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455083.1	CNTN4-005	566	54aa	ENSP00000390560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JGK9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000434053.1	CNTN4-011	528	137aa	ENSP00000404085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JIY1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000427741.1	CNTN4-003	3040	232aa	ENSP00000396719.1	Nonsense mediated decay		C9JGK9 C9JMQ2 F8WD58	-	-
ENST00000475817.1	CNTN4-017	614	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473058.1	CNTN4-013	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490876.1	CNTN4-007	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484686.1	CNTN4-016	3064	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000430505.2	CNTN4-010	2637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000438282.2	CNTN4-006	2463	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480113.1	CNTN4-012	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473173.1	CNTN4-014	565	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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