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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX13 ENSG00000143842

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Description

SRY (sex determining region Y)-box 13 [Source:HGNC Symbol;Acc:11192]

Gene Synonyms

ICA12, MGC117216, Sox-13

Location

Chromosome 1: 204,042,243-204,096,863 forward strand.

GRCh37:CM000663.1

About this gene

This gene has 9 transcripts (splice variants), 211 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367204.1	SOX13-002	3579	622aa	ENSP00000356172.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44299	B4E3N9 E9PKD6 E9PPW0 Q9UN79	NM_005686.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000528591.1	SOX13-008	597	179aa	ENSP00000436297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKD6 E9PPW0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525442.1	SOX13-007	538	57aa	ENSP00000433595.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKD6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000480326.1	SOX13-003	699	128aa	ENSP00000434093.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000367203.4	SOX13-001	3525	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000272193.6	SOX13-004	1754	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530882.1	SOX13-006	769	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000534185.1	SOX13-005	723	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000525258.1	SOX13-009	744	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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