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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LHX9 ENSG00000143355

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Description

LIM homeobox 9 [Source:HGNC Symbol;Acc:14222]

Location

Chromosome 1: 197,881,037-197,904,608 forward strand.

GRCh37:CM000663.1

About this gene

This gene has 8 transcripts (splice variants), 203 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367387.4	LHX9-004	2503	397aa	ENSP00000356357.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1393	Q9NQ69	NM_020204.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000367390.3	LHX9-001	7413	388aa	ENSP00000356360.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30962	Q9NQ69	NM_001014434.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000337020.2	LHX9-002	2336	330aa	ENSP00000337969.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQ69	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000561173.1	LHX9-007	2144	336aa	ENSP00000453064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YL54	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000367391.1	LHX9-003	1623	321aa	ENSP00000356361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9NQ69	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000367388.3	LHX9-005	754	119aa	ENSP00000356358.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000606127.1	LHX9-009	425	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475727.1	LHX9-006	259	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

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Summary

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