Gene: SS18 ENSG00000141380

Description

synovial sarcoma translocation, chromosome 18 [Source:HGNC Symbol;Acc:11340]

Gene Synonyms

SSXT, SYT

Location

Chromosome 18: 23,596,578-23,671,181 reverse strand.

GRCh37:CM000680.1

About this gene

This gene has 29 transcripts (splice variants), 209 orthologues, 2 paralogues and is associated with 53 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000415083.2	SS18-003	3053	418aa	ENSP00000414516.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32807	B4DLD3 B4DR34 J3KT22 J3QLJ7 J3QQX5 Q15532	NM_005637.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542420.2	SS18-002	2321	395aa	ENSP00000438066.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DLD3 B4DR34 J3KT22 J3QLJ7 J3QQX5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000269137.7	SS18-001	1836	387aa	ENSP00000269137.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54183	B4E2J6 J3KT22 J3QLJ7 J3QQX5 Q15532 Q4VAX0 Q6FGL9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542743.1	SS18-202	1827	335aa	ENSP00000444551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2J6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000539849.1	SS18-201	1548	336aa	ENSP00000444647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DR34	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545952.1	SS18-203	1545	335aa	ENSP00000443097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2J6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000584083.1	SS18-023	663	130aa	ENSP00000463943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLJ7 J3QQX5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579061.1	SS18-024	646	152aa	ENSP00000462766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KT22 J3QLJ7 J3QQX5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581021.1	SS18-022	588	70aa	ENSP00000463586.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLJ7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579640.1	SS18-004	1840	58aa	ENSP00000462363.1	Nonsense mediated decay		J3KRP6 J3QSB3	-	-
ENST00000269138.5	SS18-007	1548	61aa	ENSP00000269138.5	Nonsense mediated decay		-	-	-
ENST00000585121.1	SS18-005	1545	84aa	ENSP00000462838.1	Nonsense mediated decay		J3KT74	-	-
ENST00000539244.2	SS18-006	977	41aa	ENSP00000441760.2	Nonsense mediated decay		F5GWN1	-	-
ENST00000578954.1	SS18-014	756	60aa	ENSP00000464664.1	Nonsense mediated decay		J3QS72	-	-
ENST00000582448.1	SS18-009	585	35aa	ENSP00000464609.1	Nonsense mediated decay		J3QSB3	-	-
ENST00000577636.1	SS18-026	580	55aa	ENSP00000463933.1	Nonsense mediated decay		J3QQW6	-	-
ENST00000578700.1	SS18-010	575	45aa	ENSP00000464673.1	Nonsense mediated decay		J3QSG1	-	-
ENST00000581570.1	SS18-016	571	60aa	ENSP00000464556.1	Nonsense mediated decay		J3QS72	-	-
ENST00000580751.1	SS18-018	547	60aa	ENSP00000464049.1	Nonsense mediated decay		J3QS72	-	-
ENST00000580642.1	SS18-019	545	58aa	ENSP00000462104.1	Nonsense mediated decay		J3KRP6 J3QSB3	-	-
ENST00000582792.1	SS18-017	531	94aa	ENSP00000463928.1	Nonsense mediated decay		J3QQW2	-	-
ENST00000577572.1	SS18-011	510	68aa	ENSP00000463802.1	Nonsense mediated decay		J3QQM2 J3QSG1	-	-
ENST00000585241.1	SS18-025	774	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000577751.1	SS18-008	580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000578595.1	SS18-021	406	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583595.1	SS18-015	375	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582092.1	SS18-027	215	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000580958.1	SS18-013	775	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580003.1	SS18-012	609	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: SS18 ENSG00000141380

Summary