Description
synovial sarcoma translocation, chromosome 18 [Source:HGNC Symbol;Acc:11340]
Gene Synonyms
SSXT, SYT
Location
Chromosome 18: 23,596,578-23,671,181 reverse strand.
GRCh37:CM000680.1
About this gene
This gene has 29 transcripts (splice variants), 209 orthologues, 2 paralogues and is associated with 53 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000415083.2 | SS18-003 | 3053 | 418aa | ENSP00000414516.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32807 | B4DLD3 B4DR34 J3KT22 J3QLJ7 J3QQX5 Q15532 | NM_005637.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000542420.2 | SS18-002 | 2321 | 395aa | ENSP00000438066.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DLD3 B4DR34 J3KT22 J3QLJ7 J3QQX5 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000269137.7 | SS18-001 | 1836 | 387aa | ENSP00000269137.7 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS54183 | B4E2J6 J3KT22 J3QLJ7 J3QQX5 Q15532 Q4VAX0 Q6FGL9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000542743.1 | SS18-202 | 1827 | 335aa | ENSP00000444551.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4E2J6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000539849.1 | SS18-201 | 1548 | 336aa | ENSP00000444647.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4DR34 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000545952.1 | SS18-203 | 1545 | 335aa | ENSP00000443097.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B4E2J6 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000584083.1 | SS18-023 | 663 | 130aa | ENSP00000463943.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3QLJ7 J3QQX5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000579061.1 | SS18-024 | 646 | 152aa | ENSP00000462766.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KT22 J3QLJ7 J3QQX5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000581021.1 | SS18-022 | 588 | 70aa | ENSP00000463586.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3QLJ7 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000579640.1 | SS18-004 | 1840 | 58aa | ENSP00000462363.1 | Nonsense mediated decay | J3KRP6 J3QSB3 | - | - | |
| ENST00000269138.5 | SS18-007 | 1548 | 61aa | ENSP00000269138.5 | Nonsense mediated decay | - | - | - | |
| ENST00000585121.1 | SS18-005 | 1545 | 84aa | ENSP00000462838.1 | Nonsense mediated decay | J3KT74 | - | - | |
| ENST00000539244.2 | SS18-006 | 977 | 41aa | ENSP00000441760.2 | Nonsense mediated decay | F5GWN1 | - | - | |
| ENST00000578954.1 | SS18-014 | 756 | 60aa | ENSP00000464664.1 | Nonsense mediated decay | J3QS72 | - | - | |
| ENST00000582448.1 | SS18-009 | 585 | 35aa | ENSP00000464609.1 | Nonsense mediated decay | J3QSB3 | - | - | |
| ENST00000577636.1 | SS18-026 | 580 | 55aa | ENSP00000463933.1 | Nonsense mediated decay | J3QQW6 | - | - | |
| ENST00000578700.1 | SS18-010 | 575 | 45aa | ENSP00000464673.1 | Nonsense mediated decay | J3QSG1 | - | - | |
| ENST00000581570.1 | SS18-016 | 571 | 60aa | ENSP00000464556.1 | Nonsense mediated decay | J3QS72 | - | - | |
| ENST00000580751.1 | SS18-018 | 547 | 60aa | ENSP00000464049.1 | Nonsense mediated decay | J3QS72 | - | - | |
| ENST00000580642.1 | SS18-019 | 545 | 58aa | ENSP00000462104.1 | Nonsense mediated decay | J3KRP6 J3QSB3 | - | - | |
| ENST00000582792.1 | SS18-017 | 531 | 94aa | ENSP00000463928.1 | Nonsense mediated decay | J3QQW2 | - | - | |
| ENST00000577572.1 | SS18-011 | 510 | 68aa | ENSP00000463802.1 | Nonsense mediated decay | J3QQM2 J3QSG1 | - | - | |
| ENST00000585241.1 | SS18-025 | 774 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000577751.1 | SS18-008 | 580 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000578595.1 | SS18-021 | 406 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000583595.1 | SS18-015 | 375 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000582092.1 | SS18-027 | 215 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000580958.1 | SS18-013 | 775 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000580003.1 | SS18-012 | 609 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
