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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NOVA1 ENSG00000139910

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Description

neuro-oncological ventral antigen 1 [Source:HGNC Symbol;Acc:7886]

Gene Synonyms

Nova-1

Location

Chromosome 14: 26,912,299-27,066,960 reverse strand.

GRCh37:CM000676.1

About this gene

This gene has 14 transcripts (splice variants), 294 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000539517.2	NOVA1-003	3912	507aa	ENSP00000438875.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32061	B7Z770 F8VW64 P51513	NM_002515.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000465357.2	NOVA1-002	3573	483aa	ENSP00000447391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32060	G8JLA5 P51513	NM_006489.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000267422.7	NOVA1-201	2021	385aa	ENSP00000267422.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z770 F8VW64	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000574031.1	NOVA1-013	1431	152aa	ENSP00000459545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2B5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000549571.1	NOVA1-006	1005	173aa	ENSP00000449185.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VWX1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449198.2	NOVA1-007	959	277aa	ENSP00000408914.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VW64 J3KQU3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000547619.1	NOVA1-010	947	211aa	ENSP00000448157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W659	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000344429.5	NOVA1-001	896	181aa	ENSP00000342387.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9635	P51513	NM_006491.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000549146.1	NOVA1-008	592	96aa	ENSP00000449113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VW64	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000347476.6	NOVA1-012	549	109aa	ENSP00000299472.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G8JLA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000483536.2	NOVA1-004	6575	121aa	ENSP00000448956.1	Nonsense mediated decay		F8VYI3 H0YHZ1	-	-
ENST00000546546.1	NOVA1-011	563	49aa	ENSP00000448144.1	Nonsense mediated decay		H0YHZ1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000551754.1	NOVA1-005	488	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000547415.1	NOVA1-009	500	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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