Loading…

Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SLC15A4 ENSG00000139370

.

Description

solute carrier family 15 (oligopeptide transporter), member 4 [Source:HGNC Symbol;Acc:23090]

Gene Synonyms

PHT1, PTR4

Location

Chromosome 12: 129,277,739-129,308,528 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 8 transcripts (splice variants), 203 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000266771.5	SLC15A4-001	2776	577aa	ENSP00000266771.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9264	B6ZDF2 F5GZQ7 Q8N697	NM_145648.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000544112.1	SLC15A4-005	1631	240aa	ENSP00000439946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZQ7 Q8N697	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545031.1	SLC15A4-008	1469	94aa	ENSP00000444276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZQ7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000376740.4	SLC15A4-007	761	113aa	ENSP00000365930.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B6ZDF2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000376744.4	SLC15A4-002	2402	238aa	ENSP00000365935.4	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000539703.1	SLC15A4-006	634	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535272.1	SLC15A4-003	451	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000366292.2	SLC15A4-004	1604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

.

Summary

.

.