Loading…

Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SLC38A4 ENSG00000139209

.

Description

solute carrier family 38, member 4 [Source:HGNC Symbol;Acc:14679]

Gene Synonyms

ATA3, NAT3, PAAT, SNAT4

Location

Chromosome 12: 47,158,546-47,226,191 reverse strand.

GRCh37:CM000674.1

About this gene

This gene has 5 transcripts (splice variants), 214 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000447411.1	SLC38A4-001	3789	547aa	ENSP00000389843.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8750	F8VQY9 F8VRD9 Q969I6	NM_001143824.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000266579.4	SLC38A4-002	2728	547aa	ENSP00000266579.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8750	F8VQY9 F8VRD9 Q969I6	NM_018018.4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000547477.1	SLC38A4-004	933	219aa	ENSP00000450071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VQY9 F8VRD9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546940.1	SLC38A4-003	764	191aa	ENSP00000448543.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRD9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550670.1	SLC38A4-005	423	141aa	ENSP00000448186.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

.

Summary

.

.