Description
leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:25965]
Gene Synonyms
FLJ20156, PGs4
Location
Chromosome 15: 71,145,578-71,342,414 forward strand.
GRCh37:CM000677.1
About this gene
This gene has 29 transcripts (splice variants), 211 orthologues and 13 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000560369.1 | LRRC49-005 | 2586 | 691aa | ENSP00000453273.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS58376 | H0YKE9 H0YKI5 H0YLQ8 H0YNI5 H0YNV5 Q8IUZ0 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000260382.5 | LRRC49-006 | 2784 | 686aa | ENSP00000260382.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS32282 | H0YKE9 H0YKI5 H0YLQ8 H0YNI5 H0YNV5 Q8IUZ0 | NM_017691.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000443425.2 | LRRC49-201 | 2672 | 642aa | ENSP00000414065.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55971 | B7Z7G0 H0YKE9 H0YKI5 H0YLQ8 H0YNI5 H0YNV5 Q8IUZ0 | NM_001199018.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000544974.2 | LRRC49-001 | 2582 | 676aa | ENSP00000439600.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS61694 | F5H1J4 H0YKE9 H0YKI5 H0YLQ8 H0YNI5 H0YNV5 | NM_001284357.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000560691.1 | LRRC49-008 | 2531 | 392aa | ENSP00000454170.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YKE9 H0YKI5 H0YLQ8 H0YNI5 H0YNV5 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000560158.2 | LRRC49-011 | 1898 | 374aa | ENSP00000452775.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YKE9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000559806.1 | LRRC49-016 | 744 | 115aa | ENSP00000453300.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YKI5 H0YLQ8 H0YNI5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000558546.1 | LRRC49-002 | 602 | 30aa | ENSP00000452925.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YKS7 H3BNA9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000558808.1 | LRRC49-018 | 585 | 96aa | ENSP00000452821.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YKI5 H0YNI5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000557977.1 | LRRC49-023 | 584 | 21aa | ENSP00000454760.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H3BNA9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000558456.1 | LRRC49-015 | 580 | 78aa | ENSP00000454026.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YNI5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000559069.1 | LRRC49-017 | 570 | 91aa | ENSP00000453402.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YLZ6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000560755.1 | LRRC49-014 | 398 | 117aa | ENSP00000452894.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0YKQ0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000561081.1 | LRRC49-004 | 3061 | 74aa | ENSP00000453728.1 | Nonsense mediated decay | - | - | - | |
| ENST00000560107.2 | LRRC49-009 | 2721 | 67aa | ENSP00000453807.1 | Nonsense mediated decay | H0YMZ6 | - | - | |
| ENST00000559201.1 | LRRC49-012 | 938 | 62aa | ENSP00000454196.1 | Nonsense mediated decay | H0YM43 | - | - | |
| ENST00000558204.1 | LRRC49-013 | 559 | 62aa | ENSP00000453038.1 | Nonsense mediated decay | H0YM43 | - | - | |
| ENST00000558032.1 | LRRC49-022 | 546 | 62aa | ENSP00000453456.1 | Nonsense mediated decay | H0YM43 | - | - | |
| ENST00000559670.1 | LRRC49-024 | 527 | 67aa | ENSP00000453731.1 | Nonsense mediated decay | H0YMT2 | - | - | |
| ENST00000436542.2 | LRRC49-007 | 2294 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000561131.2 | LRRC49-028 | 738 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000559422.1 | LRRC49-027 | 727 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000558137.1 | LRRC49-025 | 636 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000561285.1 | LRRC49-019 | 566 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000558799.1 | LRRC49-003 | 557 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000560980.1 | LRRC49-010 | 1443 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000559469.1 | LRRC49-026 | 1204 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000559685.1 | LRRC49-020 | 758 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000558271.1 | LRRC49-021 | 573 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
