Description
SPOC domain containing 1 [Source:HGNC Symbol;Acc:26338]
Gene Synonyms
FLJ25348
Location
Chromosome 1: 32,256,023-32,281,652 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 15 transcripts (splice variants), 93 orthologues and 2 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000360482.2 | SPOCD1-007 | 3960 | 1216aa | ENSP00000353670.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS347 | E9PKC3 E9PMX0 Q6ZMY3 | NM_144569.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000533231.1 | SPOCD1-008 | 3774 | 1203aa | ENSP00000435851.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS60066 | E9PKC3 E9PMX0 Q6ZMY3 | NM_001281987.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000373648.2 | SPOCD1-201 | 3626 | 544aa | ENSP00000362752.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6NLX9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000257100.3 | SPOCD1-001 | 2472 | 696aa | ENSP00000257100.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PKC3 E9PMX0 Q6ZMY3 | NM_001281988.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000452755.2 | SPOCD1-013 | 2105 | 639aa | ENSP00000399778.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PPM7 | - | - | |
| ENST00000528579.1 | SPOCD1-015 | 765 | 255aa | ENSP00000437197.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000529396.1 | SPOCD1-011 | 563 | 43aa | ENSP00000437270.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PMX0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000528791.1 | SPOCD1-009 | 487 | 87aa | ENSP00000435385.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E9PKC3 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000525930.1 | SPOCD1-010 | 477 | 20aa | ENSP00000436239.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000485944.1 | SPOCD1-002 | 2879 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000468720.1 | SPOCD1-006 | 2667 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000460061.1 | SPOCD1-004 | 2625 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000473361.1 | SPOCD1-005 | 1938 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000531039.1 | SPOCD1-012 | 581 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000532604.1 | SPOCD1-014 | 525 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
